KONEKTIVITAS GENETIK Cephalopholis sexmaculata ANTARA DAERAH PENANGKAPAN DAN DAERAH KONSERVASI DI WILAYAH PENGELOLAAN PERIKANAN 714

  • Gino V Limmon Jurusan Ilmu Kelautan, Fakultas Perikanan dan Ilmu Kelautan, Universitas Pattimura
  • Johannes M S Tetelepta Jurusan Manajemen Sumberdaya Perairan, Fakultas Perikanan dan Ilmu Kelautan, Universitas Pattimura
  • Jesaya A Pattikawa Jurusan Manajemen Sumberdaya Perairan, Fakultas Perikanan dan Ilmu Kelautan, Universitas Pattimura
  • Yuliana Natan Jurusan Manajemen Sumberdaya Perairan, Fakultas Perikanan dan Ilmu Kelautan, Universitas Pattimura
  • Chimberly Silooy Program Studi Magister Ilmu Kelautan, Program Pascasarjana, Universitas Pattimura
Keywords: FMA 714, Cephalopholis sexmaculata, DNA Barcoding, connectivity, phylogenetic

Abstract

The Fisheries Management Area (FMA 714) has great potential for reef fish with high diversity. However, exploitation of reef fish, especially grouper in FMA 714 is also high to meet national and international market demand. One of the species of grouper is Cephalopholis sexmaculata from the Serranidae family. This research was conducted with the aim to determine genetic distance and phylogenetic relationships as well as genetic diversity, population structure and genetic connectivity of the C. sexmaculata in conservation areas and fishing areas in FMA 714 using DNA barcoding. Samples of C. sexmaculata were collected using a survey method with analyzes carried out including molecular analysis, phylogenetic relationships as well as genetic diversity and connectivity. The results of the research show that the C. sexmaculata population in FMA 714 has a very close relationship with the the values of genetic distance ranging from 0-10.9%. The genetic diversity obtained also shows the value of 1 which is categorized as high in each population. The connectivity formed from the population structure of this species indicates the existence of genetic exchange between the C. sexmaculatapopulation in the conservation area and the fishing area in FMA 714.

 

ABSTRAK

Wilayah Pengelolaan Perikanan (WPP 714) memiliki potensi ikan karang yang besar dengan keragaman yang tinggi. Walaupun demikian, eksploitasi ikan karang terutama ikan kerapu di WPP 714 juga cukup tinggi untuk memenuhi permintaan pasar nasional dan internasional. Salah satu jenis ikan kerapu adalah Cephalopholis sexmaculata dari famili Serranidae. Penelitian ini dilakukan dengan tujuan untuk mengetahui jarak genetik dan hubungan filogenetik serta keragaman genetik, struktur populasi dan konektivitas genetik dari spesies C. sexmaculata antara daerah konservasi dan daerah penangkapan di WPP 714 dengan menggunakan DNA barcoding. Sampel ikan C. sexmaculata diperoleh menggunakan metode survei dengan analisis yang dilakukan meliputi analisis molekuler, hubungan kekerabatan atau filogenetik serta keragaman dan konektivitas genetik. Hasil penelitian menunjukan bahwa populasi C. sexmaculata di WPP 714 memiliki hubungan yang sangat dekat dengan jarak genetika yang diperoleh berkisar antara 0-10,9%. Nilai keragaman genetik yang diperoleh juga menunjukan angka 1 yang terkategori tinggi pada setiap populasi. Konektivitas yang terbentuk dari struktur populasi pada spesies ini menunjukan pendugaan terhadap adanya pertukaran genetik antara populasi C. sexmaculata di daerah konservasi dengan daerah penangkapan di WPP 714.

Kata Kunci: WPP 714, Cephalopholis sexmaculata, penanda DNA, konektivitas, filogenetik

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References

Akbar, N. N., & Labenua, R. (2018). Keragaman Genetik Ikan Cakalang (Katsuwonus pelamis) di Perairan Laut Maluku Utara. Depik, 7(2), 164–176. https://doi.org/10.13170/depik.7.2.11156

Amorim, P., Sousa, P., Jardim, E., Azevedo, M., & Menezes, G. M. (2020). Length-Frequency Data Approaches to Evaluate Snapper and Grouper Fisheries in The Java Sea, Indonesia. Fisheries Research, 229, 105576. https://doi.org/https://doi.org/10.1016/j.fishres.2020.105576

Ariyanti, Y., Farajallah, A., & Arlyza, I. S. (2015). Phylogenetic Analysis of the Darkfin Hind, Cephalopholis urodeta (Serranidae) Using Partial Mitochondrial CO1 Gene Sequences (Analisis Filogenetik Cephalopholis urodeta (Serranidae) Menggunakan Runutan Gen CO1 Mitokondria Parsial). ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 20(1), 38-44. https://doi.org/10.14710/ik.ijms.20.1.38-44

Balbar, A. C., & Metaxas, A. (2019). The Current Application of Ecological Connectivity in The Design of Marine Protected Areas. Global Ecology and Conservation, 17, 1–20. https://doi.org/10.1016/j.gecco.2019.e00569

BALITBANG KP. (2016). Potensi Sumber Daya Kelautan Dan Perikanan WPPNRI 714. AMaFRaD PRESS.

Bandelt, H. J., Forster, P., & Röhl, A. (1999). Median-joining Networks for Inferring Intraspecific Phylogenies. Molecular Biology and Evolution, 16(1), 37–48. https://doi.org/10.1093/oxfordjournals.molbev.a026036

Bramasta, R. C., Faiqoh, E., Hendrawan, I. G., Sembiring, A., & Yusmalinda, N. L. A. (2021). Identifikasi Hiu yang Diperdagangkan di Bali Menggunakan Metode DNA Barcoding dan Analisis Filogenetik. Journal of Marine and Aquatic Sciences, 7(1), 84-93. https://doi.org/10.24843/jmas.2021.v07.i01.p12

Bray, D. (2022). Cephalopholis sexmaculata. Fishes of Australia.

Dogan, I., & Dogan, N. (2016). Genetic Distance Measures: Review. Turkiye Klinikleri Journal of Biostatistics, 8(1), 87–93. https://doi.org/10.5336/biostatic.2015-49517

Excoffier, L., Smouse, P. E., & Quattro, J. M. (1992). Analysis of Molecular Variance Inferred From Metric Distances Among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data. Genetics Society of America. https://doi.org/10.3354/meps198283

Fietri, W. A., Razak, A., & Ahda, Y. (2020). Analisis Filogenetik Ikan Tuna (Thunnus spp) di Perairan Maluku Utara Menggunakan COI (Cytocrome Oxydase I). BIOMA : Jurnal Biologi Makasar, 5(1), 47–59.

Folmer, O., Black, M., Hoeh, W., & Lutz, R. (1994). DNA Primers For Amplification Of Mitochondrial Cytochrome C Oxidase Subunit I From Diverse Metazoan Invertebrates. Molecular Marine Biology and Biotechnology, 3(5), 294–299. https://doi.org/10.1071/ZO9660275

Gardner, J., Bell, J., Constable, H., Ritchie, P., & Zuccarello, G. (2010). Multi-species Coastal Marine Connectivity : A Literature Review with Recommendations for Further Research. In New Zealand Aquatic Environment and Biodiversity Report (Issue 58).

Hikam, A. M., Mubarakati, N. J., Dailami, M., & Toha, A. H. A. (2021). DNA Barcoding Pada Invertebrata Laut. Jurnal Biologi Udayana, 25(1), 46–56. https://doi.org/10.24843/jbiounud.2021.v25.i01.p06

Horiike, T. (2016). An Introduction to Molecular Phylogenetic Analysis. Review in Agricultural Science, 4, 36–45. https://doi.org/10.7831/ras.4.

Kimura, M. (1980). A Simple Method for Estimating Evolutionary Rates of Base Substitutions Through Comparative Studies of Nucleotide Sequences. Journal of Molecular Evolution, 16(2), 111–120. https://doi.org/10.1007/BF01731581

KKP. (2014). Peraturan Menteri Nomor 18 Tahun 2014 tentang Wilayah Pengelolaan Perikanan Negara Republik Indonesia. Jakarta. Indonesia

Kusuma, A. B., Tapilatu, R. F., & Tururaja, T. S. (2021). Identifikasi Morfologi Ikan Kerapu (Serranidae: Epinephelinae) Yang Didaratkan Di Waisai Raja Ampat. Jurnal Enggano, 6(1), 37–46.

Leatemia, S. P. O., Manumpil, A. W., Saleky, D., & Dailami, M. (2018). DNA Barcode dan Molekuler Filogeni Turbo sp. di Perairan Manokwari Papua Barat DNA. Prosiding Seminar Nasionall MIPA UNIPA KE-3 Tahun 2018.

Marwayana, O. N. (2015). Ekstraksi Asam Deoksiribonukleat (DNA) Dari Sampel Jaringan Otot. Oseana, 15(2), 1–9.

Nei, M. (1972). Chapter 9: Genetic Distance Between Populations. The American Naturalist, 106(949), 283–292. https://doi.org/10.7312/nei-92038-010

Nei, M. (1987). Molecular Evolutionary Genetics. Columbia University Press. https://doi.org/doi:10.7312/nei-92038

Rahayu, D. A., Deni Nugroho, E., & Listyorini, D. (2019). DNA Barcoding Ikan Introduksi Khas Telaga Sari, Kabupaten Pasuruan. Biotropika: Journal of Tropical Biology, 7(2), 51-62.

Retraubun, A. S. W., Tupan, C. I., Selanno, D. A. J., Rijoly, F., Pello, F. S., Ayal, F. W., Limmon, G. V., Abrahamsz, J., Pietersz, J. H., Pattikawa, J. A., Tetelepta, J. M. S., Mamesah, J. A. B., Tomasouw, J. L., Siahainenia, L., Hulopi, M., Sangaji, M., Tuapattinaja, M. A., Wawo, M., Huliselan, N. V., … Natan, Y. (2023). Modul Blue Halo S 101 (V. P. H. Nikijuluw, E. Wibisono, & J. L. Tomasouw (eds.)). Yayasan Konservasi Cakrawala Indonesia.

Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X., & Rozas, R. (2003). DnaSP, DNA Polymorphism Analyses by The Coalescent and Other Methods. Bioinformatics, 19(18), 2496–2497. https://doi.org/10.1093/bioinformatics/btg359

Saitou, N., & Nei, M. (1987). The Neighbor-joining Method: A New Method For Reconstructing Phylogenetic Trees. Molecular Biology and Evolution, 4(4), 406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454

Selkoe, K. A., D’Aloia, C. C., Crandall, E. D., Iacchei, M., Liggins, L., Puritz, J. B., Von Der Heyden, S., & Toonen, R. J. (2016). A Decade of Seascape Genetics: Contributions to Basic and Applied Marine Connectivity. Marine Ecology Progress Series, 554, 1–19. https://doi.org/10.3354/meps11792

Suharsono. (2014). Biodiversitas Biota Laut Indonesia (Kekayaan Jenis, Sebaran, Kelimpahan, Manfaat dan Nilai Ekonomis). Pusat Penelitian Oseanografi LIPI.

Syah, M. A. (2022). Isolasi dan Karakterisasi Molekuler Gen 16S rRNA Bakteri Lipolitik Asal Limbah Kulit Biji Jambu Mete. Jurnal Sumberdaya Hayati, 8(1), 20–26. https://doi.org/10.29244/jsdh.8.1.20-26

Tamura, K., Kumar, S., Stecher, G., Li, M., & Knyaz, C. (2018). MEGA X: Molecular Evolutionary Genetics Analysis Across Computing Platforms. Molecular Biology and Evolution, 35(6), 1547–1549. https://doi.org/10.1093/molbev/msy096

Published
2023-10-30
How to Cite
Limmon, G., Tetelepta, J., Pattikawa, J., Natan, Y., & Silooy, C. (2023). KONEKTIVITAS GENETIK Cephalopholis sexmaculata ANTARA DAERAH PENANGKAPAN DAN DAERAH KONSERVASI DI WILAYAH PENGELOLAAN PERIKANAN 714. TRITON: Jurnal Manajemen Sumberdaya Perairan, 19(2), 122-131. https://doi.org/10.30598/TRITONvol19issue2page122-131